Utilisateur:SimGoss/Brouillon
Riboswitch s0670
[modifier | modifier le code]
| Riboswitch s0670 | |
 Predicted secondary structure using Rscape. | |
| Name | riboswitch s0670 |
|---|---|
| GO | GO:0006520 |
| RNA type | Cis-reg; riboswitch; |
| Tax domain | Firmicutes |
The Riboswitch s0670 family is an hypothetical RNA family of riboswitch found in the Firmicutes taxa. The family was created by using the rfam cloud pipeline[1]. The rna in this family are often found close to genes coding for enzyme implicated in cellular amino acid metabolic process like the O-acetylhomoserine sulfhydrylase of Clostridium difficile. The seconday structure was predicted using the locaRNA[2] alignement with the Rscape prediction program[3].
References
[modifier | modifier le code]- S. Griffiths-Jones, « Rfam: annotating non-coding RNAs in complete genomes », Nucleic Acids Research, vol. 33, no Database issue, , D121–D124 (ISSN 1362-4962, DOI 10.1093/nar/gki081, lire en ligne, consulté le )
- S. Will, T. Joshi, I. L. Hofacker et P. F. Stadler, « LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs », RNA, vol. 18, no 5, , p. 900–914 (ISSN 1355-8382, DOI 10.1261/rna.029041.111, lire en ligne, consulté le )
- Elena Rivas et Jody Clements, « Estimating the power of sequence covariation for detecting conserved RNA structure », sur dx.doi.org, (consulté le )